Bioconda: Sustainable and comprehensive software distribution for the life sciences

R Dale; B Grüning; A Sjödin; J Rowe; BA Chapman; CH Tomkins-Tinch; R Valieris; B Batut; A Caprez; T Cokelaer; D Yusuf; KA Beauchamp; K Brinda; T Wollmann; GL Corguillé; D Ryan; A Bretaudeau; Youri Hoogstrate; BS Pedersen; S Heeringen; M Raden; S Luna-Valero; N Soranzo; MD de Smet; GV Kuster; R Kirchner; L Pantano; Z Charlop-Powers; K Thornton; M Martin; MD Beek; D Maticzka; M Miladi; S Will; K Gravouil; P Unneberg; C Brueffer; C Blank; VC Piro; J Wolff; T Antao; S Gladman; I Shlyakhter; M de Hollander; P Mabon; W Shen; J Boekel; M Holtgrewe; D Bouvier; JR de Ruiter; J Cabral; S Choudhary; N Harding; R Kleinkauf; E Enns; F Eggenhofer; J Brown; PJA Cock; H Timm; C Thomas; XO Zhang; M Chambers; N Turaga; E Seiler; C Brislawn; E Pruesse; J Fallmann; J Kelleher; H Nguyen; L Parsons; Z Fang; EB Stovner; N Stoler; S Ye; I Wohlers; R Farouni; M Freeberg; JE Johnson; M Bargull; PR Kensche; TH Webster; JM Eppley; C Stahl; AS Rose; A Reynolds; LB Wang; X Garnier; S Dirmeier; M Knudsen; J Taylor; A Srivastava; V Rai; R Agren; A Junge; RV Guimera; A Khan; S Schmeier; G He; L Pinello; E Hägglund; AS Mikheyev; J Preussner; NR Waters; W Li; J Capellades; AT Chande; Y Pirola; Saskia Hiltemann; ML Bendall; S Singh; WA Dunn; A Drouin; TD Domenico; I de Bruijn; DE Larson; D Chicco; E Grassi; G Gonnella; J B; L Wang; F Giacomoni; E Clarke; D Blankenberg; C Tran; R Patro; S Laurent; M Gopez; B Sennblad; J A Baaijens; P Ewels; PR Wright; OM Enache; P Roger; W Dampier; D Koppstein; UK Devisetty; T Rausch; M Cornwell; AE Salatino; J Seiler; M Jung; E Kornobis; F Cumbo; BK Stöcker; O Moskalenko; DR Bogema; ML Workentine; SJ Newhouse; FDV Leprevost; K Arvai; J Köster

doi:10.1038/s41592-018-0046-7

Bioconda: Sustainable and comprehensive software distribution for the life sciences

R Dale, B Grüning, A Sjödin, J Rowe, BA Chapman, CH Tomkins-Tinch, R Valieris, B Batut, A Caprez, T Cokelaer, D Yusuf, KA Beauchamp, K Brinda, T Wollmann, GL Corguillé, D Ryan, A Bretaudeau, Youri Hoogstrate, BS Pedersen, S HeeringenM Raden, S Luna-Valero, N Soranzo, MD de Smet, GV Kuster, R Kirchner, L Pantano, Z Charlop-Powers, K Thornton, M Martin, MD Beek, D Maticzka, M Miladi, S Will, K Gravouil, P Unneberg, C Brueffer, C Blank, VC Piro, J Wolff, T Antao, S Gladman, I Shlyakhter, M de Hollander, P Mabon, W Shen, J Boekel, M Holtgrewe, D Bouvier, JR de Ruiter, J Cabral, S Choudhary, N Harding, R Kleinkauf, E Enns, F Eggenhofer, J Brown, PJA Cock, H Timm, C Thomas, XO Zhang, M Chambers, N Turaga, E Seiler, C Brislawn, E Pruesse, J Fallmann, J Kelleher, H Nguyen, L Parsons, Z Fang, EB Stovner, N Stoler, S Ye, I Wohlers, R Farouni, M Freeberg, JE Johnson, M Bargull, PR Kensche, TH Webster, JM Eppley, C Stahl, AS Rose, A Reynolds, LB Wang, X Garnier, S Dirmeier, M Knudsen, J Taylor, A Srivastava, V Rai, R Agren, A Junge, RV Guimera, A Khan, S Schmeier, G He, L Pinello, E Hägglund, AS Mikheyev, J Preussner, NR Waters, W Li, J Capellades, AT Chande, Y Pirola, Saskia Hiltemann, ML Bendall, S Singh, WA Dunn, A Drouin, TD Domenico, I de Bruijn, DE Larson, D Chicco, E Grassi, G Gonnella, J B, L Wang, F Giacomoni, E Clarke, D Blankenberg, C Tran, R Patro, S Laurent, M Gopez, B Sennblad, J A Baaijens, P Ewels, PR Wright, OM Enache, P Roger, W Dampier, D Koppstein, UK Devisetty, T Rausch, M Cornwell, AE Salatino, J Seiler, M Jung, E Kornobis, F Cumbo, BK Stöcker, O Moskalenko, DR Bogema, ML Workentine, SJ Newhouse, FDV Leprevost, K Arvai, J Köster

Research output: Contribution to journal › Article › Academic › peer-review

643 Citations (Scopus)

Original language	Undefined/Unknown
Pages (from-to)	475-476
Number of pages	2
Journal	Nature Methods
Volume	15
Issue number	7
DOIs	https://doi.org/10.1038/s41592-018-0046-7
Publication status	Published - 2018

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EMC OR-01

Access to Document

10.1038/s41592-018-0046-7

Cite this

Dale, R., Grüning, B., Sjödin, A., Rowe, J., Chapman, BA., Tomkins-Tinch, CH., Valieris, R., Batut, B., Caprez, A., Cokelaer, T., Yusuf, D., Beauchamp, KA., Brinda, K., Wollmann, T., Corguillé, GL., Ryan, D., Bretaudeau, A., Hoogstrate, Y., Pedersen, BS., ... Köster, J. (2018). Bioconda: Sustainable and comprehensive software distribution for the life sciences. Nature Methods, 15(7), 475-476. https://doi.org/10.1038/s41592-018-0046-7

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doi = "10.1038/s41592-018-0046-7",

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pages = "475--476",

journal = "Nature Methods",

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Dale, R, Grüning, B, Sjödin, A, Rowe, J, Chapman, BA, Tomkins-Tinch, CH, Valieris, R, Batut, B, Caprez, A, Cokelaer, T, Yusuf, D, Beauchamp, KA, Brinda, K, Wollmann, T, Corguillé, GL, Ryan, D, Bretaudeau, A, Hoogstrate, Y, Pedersen, BS, Heeringen, S, Raden, M, Luna-Valero, S, Soranzo, N, de Smet, MD, Kuster, GV, Kirchner, R, Pantano, L, Charlop-Powers, Z, Thornton, K, Martin, M, Beek, MD, Maticzka, D, Miladi, M, Will, S, Gravouil, K, Unneberg, P, Brueffer, C, Blank, C, Piro, VC, Wolff, J, Antao, T, Gladman, S, Shlyakhter, I, de Hollander, M, Mabon, P, Shen, W, Boekel, J, Holtgrewe, M, Bouvier, D, de Ruiter, JR, Cabral, J, Choudhary, S, Harding, N, Kleinkauf, R, Enns, E, Eggenhofer, F, Brown, J, Cock, PJA, Timm, H, Thomas, C, Zhang, XO, Chambers, M, Turaga, N, Seiler, E, Brislawn, C, Pruesse, E, Fallmann, J, Kelleher, J, Nguyen, H, Parsons, L, Fang, Z, Stovner, EB, Stoler, N, Ye, S, Wohlers, I, Farouni, R, Freeberg, M, Johnson, JE, Bargull, M, Kensche, PR, Webster, TH, Eppley, JM, Stahl, C, Rose, AS, Reynolds, A, Wang, LB, Garnier, X, Dirmeier, S, Knudsen, M, Taylor, J, Srivastava, A, Rai, V, Agren, R, Junge, A, Guimera, RV, Khan, A, Schmeier, S, He, G, Pinello, L, Hägglund, E, Mikheyev, AS, Preussner, J, Waters, NR, Li, W, Capellades, J, Chande, AT, Pirola, Y, Hiltemann, S, Bendall, ML, Singh, S, Dunn, WA, Drouin, A, Domenico, TD, de Bruijn, I, Larson, DE, Chicco, D, Grassi, E, Gonnella, G, B, J, Wang, L, Giacomoni, F, Clarke, E, Blankenberg, D, Tran, C, Patro, R, Laurent, S, Gopez, M, Sennblad, B, Baaijens, JA, Ewels, P, Wright, PR, Enache, OM, Roger, P, Dampier, W, Koppstein, D, Devisetty, UK, Rausch, T, Cornwell, M, Salatino, AE, Seiler, J, Jung, M, Kornobis, E, Cumbo, F, Stöcker, BK, Moskalenko, O, Bogema, DR, Workentine, ML, Newhouse, SJ, Leprevost, FDV, Arvai, K & Köster, J 2018, 'Bioconda: Sustainable and comprehensive software distribution for the life sciences', Nature Methods, vol. 15, no. 7, pp. 475-476. https://doi.org/10.1038/s41592-018-0046-7

TY - JOUR

T1 - Bioconda: Sustainable and comprehensive software distribution for the life sciences

AU - Dale, R

AU - Grüning, B

AU - Sjödin, A

AU - Rowe, J

AU - Chapman, BA

AU - Tomkins-Tinch, CH

AU - Valieris, R

AU - Batut, B

AU - Caprez, A

AU - Cokelaer, T

AU - Yusuf, D

AU - Beauchamp, KA

AU - Brinda, K

AU - Wollmann, T

AU - Corguillé, GL

AU - Ryan, D

AU - Bretaudeau, A

AU - Hoogstrate, Youri

AU - Pedersen, BS

AU - Heeringen, S

AU - Raden, M

AU - Luna-Valero, S

AU - Soranzo, N

AU - de Smet, MD

AU - Kuster, GV

AU - Kirchner, R

AU - Pantano, L

AU - Charlop-Powers, Z

AU - Thornton, K

AU - Martin, M

AU - Beek, MD

AU - Maticzka, D

AU - Miladi, M

AU - Will, S

AU - Gravouil, K

AU - Unneberg, P

AU - Brueffer, C

AU - Blank, C

AU - Piro, VC

AU - Wolff, J

AU - Antao, T

AU - Gladman, S

AU - Shlyakhter, I

AU - de Hollander, M

AU - Mabon, P

AU - Shen, W

AU - Boekel, J

AU - Holtgrewe, M

AU - Bouvier, D

AU - de Ruiter, JR

AU - Cabral, J

AU - Choudhary, S

AU - Harding, N

AU - Kleinkauf, R

AU - Enns, E

AU - Eggenhofer, F

AU - Brown, J

AU - Cock, PJA

AU - Timm, H

AU - Thomas, C

AU - Zhang, XO

AU - Chambers, M

AU - Turaga, N

AU - Seiler, E

AU - Brislawn, C

AU - Pruesse, E

AU - Fallmann, J

AU - Kelleher, J

AU - Nguyen, H

AU - Parsons, L

AU - Fang, Z

AU - Stovner, EB

AU - Stoler, N

AU - Ye, S

AU - Wohlers, I

AU - Farouni, R

AU - Freeberg, M

AU - Johnson, JE

AU - Bargull, M

AU - Kensche, PR

AU - Webster, TH

AU - Eppley, JM

AU - Stahl, C

AU - Rose, AS

AU - Reynolds, A

AU - Wang, LB

AU - Garnier, X

AU - Dirmeier, S

AU - Knudsen, M

AU - Taylor, J

AU - Srivastava, A

AU - Rai, V

AU - Agren, R

AU - Junge, A

AU - Guimera, RV

AU - Khan, A

AU - Schmeier, S

AU - He, G

AU - Pinello, L

AU - Hägglund, E

AU - Mikheyev, AS

AU - Preussner, J

AU - Waters, NR

AU - Li, W

AU - Capellades, J

AU - Chande, AT

AU - Pirola, Y

AU - Hiltemann, Saskia

AU - Bendall, ML

AU - Singh, S

AU - Dunn, WA

AU - Drouin, A

AU - Domenico, TD

AU - de Bruijn, I

AU - Larson, DE

AU - Chicco, D

AU - Grassi, E

AU - Gonnella, G

AU - B, J

AU - Wang, L

AU - Giacomoni, F

AU - Clarke, E

AU - Blankenberg, D

AU - Tran, C

AU - Patro, R

AU - Laurent, S

AU - Gopez, M

AU - Sennblad, B

AU - Baaijens, J A

AU - Ewels, P

AU - Wright, PR

AU - Enache, OM

AU - Roger, P

AU - Dampier, W

AU - Koppstein, D

AU - Devisetty, UK

AU - Rausch, T

AU - Cornwell, M

AU - Salatino, AE

AU - Seiler, J

AU - Jung, M

AU - Kornobis, E

AU - Cumbo, F

AU - Stöcker, BK

AU - Moskalenko, O

AU - Bogema, DR

AU - Workentine, ML

AU - Newhouse, SJ

AU - Leprevost, FDV

AU - Arvai, K

AU - Köster, J

PY - 2018

Y1 - 2018

U2 - 10.1038/s41592-018-0046-7

DO - 10.1038/s41592-018-0046-7

M3 - Article

C2 - 29967506

SN - 1548-7091

VL - 15

SP - 475

EP - 476

JO - Nature Methods

JF - Nature Methods

IS - 7

ER -