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Common genetic variants associated with cognitive performance identified using the proxy-phenotype method

  • Cornelius A. Rietveld
  • , Tõnu Esko
  • , Gail Davies
  • , Tune H. Pers
  • , Patrick Turley
  • , Beben Benyamin
  • , Christopher F. Chabris
  • , Valur Emilsson
  • , Andrew D. Johnson
  • , James J. Lee
  • , Christiaan De Leeuw
  • , Riccardo E. Marioni
  • , Sarah E. Medland
  • , Michael B. Miller
  • , Olga Rostapshova
  • , Sven J. Van Der Lee
  • , Anna A.E. Vinkhuyzen
  • , Najaf Amin
  • , Dalton Conley
  • , Jaime Derringer
  • Cornelia M. Van Duijn, Rudolf Fehrmann, Lude Franke, Edward L. Glaeser, Narelle K. Hansell, Caroline Hayward, William G. Iacono, Carla Ibrahim-Verbaas, Vincent Jaddoe, Juha Karjalainen, David Laibson, Paul Lichtenstein, David C. Liewald, Patrik K.E. Magnusson, Nicholas G. Martin, Matt McGue, George McMahon, Nancy L. Pedersen, Steven Pinker, David J. Porteous, Danielle Posthuma, Fernando Rivadeneira, Blair H. Smithk, John M. Starr, Henning Tiemeier, Nicholas J. Timpsonm, Maciej Trzaskowskin, André G. Uitterlinden, Frank C. Verhulst, Mary E. Ward, Margaret J. Wright, George Davey Smith, Ian J. Deary, Magnus Johannesson, Robert Plomin, Peter M. Visscher, Daniel J. Benjamin, David Cesarini, Philipp D. Koellinger*
*Corresponding author for this work
  • Boston Children's Hospital
  • Massachusetts Institute of Technology
  • Hebrew SeniorLife
  • Estonian Biocentre
  • University of Edinburgh
  • Harvard University
  • University of Queensland
  • Union College
  • Icelandic Heart Association
  • University of Iceland
  • National Heart, Lung, and Blood Institute (Mass.)
  • University of Minnesota Twin Cities
  • VU University Medical Center
  • Radboud University Nijmegen
  • Queensland Institute of Medical Research
  • New York University
  • University of Illinois at Urbana-Champaign
  • University Medical Centre Groningen
  • Karolinska Institutet
  • University of Bristol
  • University of Dundee
  • King's College London
  • Stockholm School of Economics
  • Cornell University
  • Erasmus School of Economics (ESE)
  • Erasmus University Rotterdam
  • University of Amsterdam

Research output: Contribution to journalArticleAcademicpeer-review

201 Citations (Scopus)

Abstract

We identify common genetic variants associated with cognitive performance using a two-stage approach, which we call the proxyphenotype method. First, we conduct a genome-wide association study of educational attainment in a large sample (n = 106,736), which produces a set of 69 education-associated SNPs. Second, using independent samples (n = 24,189), we measure the association of these education-associated SNPs with cognitive performance. Three SNPs (rs1487441, rs7923609, and rs2721173) are significantly associated with cognitive performance after correction for multiple hypothesis testing. In an independent sample of older Americans (n = 8,652), we also show that a polygenic score derived from the education-associated SNPs is associated with memory and absence of dementia. Convergent evidence from a set of bioinformatics analyses implicates four specific genes (KNCMA1, NRXN1, POU2F3, and SCRT). All of these genes are associated with a particular neurotransmitter pathway involved in synaptic plasticity, the main cellular mechanism for learning and memory.

Original languageEnglish
Pages (from-to)13790-13794
Number of pages5
JournalProceedings of the National Academy of Sciences of the U.S.A.
Volume111
Issue number38
DOIs
Publication statusPublished - 23 Sept 2014

Research programs

  • EMC MM-01-39-09-A
  • EMC MM-04-54-08-A
  • EMC NIHES-01-64-01
  • EMC NIHES-04-55-01

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