Common variants at the MHC locus and at chromosome 16q24.1 predispose to Barrett's esophagus

Z Su, LJ Gay, A Strange, C Palles, G Band, DC Whiteman, F Lescai, C Langford, M Nanji, S Edkins, Anouk Winkel, D Levine, P Sasieni, C Bellenguez, K Howarth, C Freeman, N Trudgill, AT Tucker, M Pirinen, Maikel PeppelenboschLuc van der Laan, Ernst Kuipers, JPH Drenth, WH Peters, JV Reynolds, DP Kelleher, R McManus, H Grabsch, H Prenen, R Bisschops, K Krishnadath, PD (Peter) Siersema, JWPM van Baal, M Middleton, R Petty, R Gillies, N Burch, P Bhandari, S Paterson, C Edwards, I Penman, K Vaidya, Y Ang, I Murray, P Patel, WM Ye, P Mullins, AH Wu, NC Bird, H Dallal, NJ Shaheen, LJ Murray, K Koss, L Bernstein, Y Romero, LJ Hardie, R Zhang, H Winter, DA Corley, S Panter, HA Risch, BJ Reid, I Sargeant, MD Gammon, H Smart, A Dhar, H McMurtry, H Ali, G Liu, AG Casson, WH Chow, M Rutter, A Tawil, D Morris, C Nwokolo, P Isaacs, C Rodgers, K Ragunath, C MacDonald, C Haigh, D Monk, G Davies, S Wajed, D Johnston, M Gibbons, S Cullen, N Church, R Langley, M Griffin, D Alderson, P Deloukas, SE Hunt, E Gray, S Dronov, SC Potter, A Tashakkori-Ghanbaria, M Anderson, C Brooks, JM Blackwell, E Bramon, MA Brown, JP Casas, A Corvin, A Duncanson, HS Markus, CG Mathew, CNA Palmer, R Plomin, A Rautanen, SJ Sawcer, RC Trembath, AC Viswanathan, N Wood, G Trynka, C Wijmenga, JB Cazier, P Atherfold, AM Nicholson, NL Gellatly, D Glancy, SC Cooper, D Cunningham, T Lind, J Hapeshi, D Ferry, B Rathbone, J Brown, S Love, S Attwood, S Macgregor, P Watson, S Sanders, W Ek, RF Harrison, P Moayyedi, J de Caestecker, H Barr, E Stupka, TL Vaughan, L Peltonen, CCA Spencer, I Tomlinson, P Donnelly, JAZ Jankowski

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147 Citations (Scopus)


Barrett's esophagus is an increasingly common disease that is strongly associated with reflux of stomach acid and usually a hiatus hernia, and it strongly predisposes to esophageal adenocarcinoma (EAC), a tumor with a very poor prognosis. We report the first genome-wide association study on Barrett's esophagus, comprising 1,852 UK cases and 5,172 UK controls in the discovery stage and 5,986 cases and 12,825 controls in the replication stage. Variants at two loci were associated with disease risk: chromosome 6p21, rs9257809 (P-combined = 4.09 x 10(-9); odds ratio (OR) = 1.21, 95% confidence interval (CI) = 1.13-1.28), within the major histocompatibility complex locus, and chromosome 16q24, rs9936833 (P-combined = 2.74 x 10(-10); OR = 1.14, 95% CI = 1.10-1.19), for which the closest protein-coding gene is FOXF1, which is implicated in esophageal development and structure. We found evidence that many common variants of small effect contribute to genetic susceptibility to Barrett's esophagus and that SNP alleles predisposing to obesity also increase risk for Barrett's esophagus.
Original languageUndefined/Unknown
Pages (from-to)1131-+
JournalNature Genetics
Issue number10
Publication statusPublished - 2012

Research programs

  • EMC MM-03-47-02-A
  • EMC MM-04-20-01
  • EMC MM-04-47-07

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