Comparison of sequencing methods and data processing pipelines for whole genome sequencing and minority single nucleotide variant (mSNV) analysis during an influenza A/H5N8 outbreak

Marjolein Poen; A Pohlmann; C Amid; Theo Bestebroer; S M Brookes; IH Brown; H Everett; Claudia Schapendonk; Rachel Scheuer; Saskia Smits; M Beer; Ron Fouchier; RJ Ellis

doi:10.1371/journal.pone.0229326

Comparison of sequencing methods and data processing pipelines for whole genome sequencing and minority single nucleotide variant (mSNV) analysis during an influenza A/H5N8 outbreak

Marjolein Poen
, A Pohlmann
, C Amid
, Theo Bestebroer
, S M Brookes
, IH Brown
, H Everett
, Claudia Schapendonk
, Rachel Scheuer
, Saskia Smits
, M Beer
, Ron Fouchier
, RJ Ellis

Virology

Research output: Contribution to journal › Article › Academic › peer-review

4 Citations (Scopus)

23 Downloads (Pure)

Original language	Undefined/Unknown
Journal	PLoS One (print)
Volume	15
DOIs	https://doi.org/10.1371/journal.pone.0229326
Publication status	Published - 2020

Research programs

EMC OR-01

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10.1371/journal.pone.0229326

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Cite this

Poen, M., Pohlmann, A., Amid, C., Bestebroer, T., Brookes, S. M., Brown, IH., Everett, H., Schapendonk, C., Scheuer, R., Smits, S., Beer, M., Fouchier, R., & Ellis, RJ. (2020). Comparison of sequencing methods and data processing pipelines for whole genome sequencing and minority single nucleotide variant (mSNV) analysis during an influenza A/H5N8 outbreak. PLoS One (print), 15. https://doi.org/10.1371/journal.pone.0229326

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author = "Marjolein Poen and A Pohlmann and C Amid and Theo Bestebroer and Brookes, \{S M\} and IH Brown and H Everett and Claudia Schapendonk and Rachel Scheuer and Saskia Smits and M Beer and Ron Fouchier and RJ Ellis",

year = "2020",

doi = "10.1371/journal.pone.0229326",

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Poen, M, Pohlmann, A, Amid, C, Bestebroer, T, Brookes, SM, Brown, IH, Everett, H, Schapendonk, C, Scheuer, R, Smits, S, Beer, M, Fouchier, R & Ellis, RJ 2020, 'Comparison of sequencing methods and data processing pipelines for whole genome sequencing and minority single nucleotide variant (mSNV) analysis during an influenza A/H5N8 outbreak', PLoS One (print), vol. 15. https://doi.org/10.1371/journal.pone.0229326

TY - JOUR

T1 - Comparison of sequencing methods and data processing pipelines for whole genome sequencing and minority single nucleotide variant (mSNV) analysis during an influenza A/H5N8 outbreak

AU - Poen, Marjolein

AU - Pohlmann, A

AU - Amid, C

AU - Bestebroer, Theo

AU - Brookes, S M

AU - Brown, IH

AU - Everett, H

AU - Schapendonk, Claudia

AU - Scheuer, Rachel

AU - Smits, Saskia

AU - Beer, M

AU - Fouchier, Ron

AU - Ellis, RJ

PY - 2020

Y1 - 2020

U2 - 10.1371/journal.pone.0229326

DO - 10.1371/journal.pone.0229326

M3 - Article

SN - 1932-6203

VL - 15

JO - PLoS One (print)

JF - PLoS One (print)

ER -