Computational pan-genomics: status, promises and challenges

T Marschall; M Marz; T Abeel; L Dijkstra; BE Dutilh; A Ghaffaari; P Kersey; WP Kloosterman; V Makinen; AM Novak; B Paten; D Porubsky; E Rivals; C Alkan; J A Baaijens; PIW de Bakker; V Boeva; RJP Bonnal; F Chiaromonte; R Chikhi; FD Ciccarelli; R Cijvat; E Datema; Cornelia Duijn; EE Eichler; C Ernst; E Eskin; E Garrison; M El-Kebir; GW Klau; JO Korbel; EW Lameijer; B Langmead; M Martin; P Medvedev; JC Mu; P Neerincx; K Ouwens; P Peterlongo; N Pisanti; S Rahmann; B Raphael; K Reinert; D Ridder; J (Jannemarie) Ridder; M Schlesner; O Schulz-Trieglaff; AD Sanders; S Sheikhizadeh; C Shneider; S Smit; D Valenzuela; JY Wang; L Wessels; Y Zhang; V Guryev; F Vandin; K Ye; A Schonhuth

doi:10.1093/bib/bbw089

Computational pan-genomics: status, promises and challenges

T Marschall
, M Marz
, T Abeel
, L Dijkstra
, BE Dutilh
, A Ghaffaari
, P Kersey
, WP Kloosterman
, V Makinen
, AM Novak
, B Paten
, D Porubsky
, E Rivals
, C Alkan
, J A Baaijens
, PIW de Bakker
, V Boeva
, RJP Bonnal
, F Chiaromonte
, R Chikhi

FD Ciccarelli, R Cijvat, E Datema, Cornelia Duijn, EE Eichler, C Ernst, E Eskin, E Garrison, M El-Kebir, GW Klau, JO Korbel, EW Lameijer, B Langmead, M Martin, P Medvedev, JC Mu, P Neerincx, K Ouwens, P Peterlongo, N Pisanti, S Rahmann, B Raphael, K Reinert, D Ridder, J (Jannemarie) Ridder, M Schlesner, O Schulz-Trieglaff, AD Sanders, S Sheikhizadeh, C Shneider, S Smit, D Valenzuela, JY Wang, L Wessels, Y Zhang, V Guryev, F Vandin, K Ye, A Schonhuth

Research output: Contribution to journal › Article › Academic › peer-review

309 Citations (Scopus)

39 Downloads (Pure)

Original language	Undefined/Unknown
Pages (from-to)	118-135
Number of pages	18
Journal	Briefings in Bioinformatics
Volume	19
Issue number	1
DOIs	https://doi.org/10.1093/bib/bbw089
Publication status	Published - 2018

Research programs

EMC MM-04-20-01
EMC NIHES-01-64-02

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10.1093/bib/bbw089

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http://hdl.handle.net/1765/112706

Cite this

Marschall, T., Marz, M., Abeel, T., Dijkstra, L., Dutilh, BE., Ghaffaari, A., Kersey, P., Kloosterman, WP., Makinen, V., Novak, AM., Paten, B., Porubsky, D., Rivals, E., Alkan, C., Baaijens, J. A., de Bakker, PIW., Boeva, V., Bonnal, RJP., Chiaromonte, F., ... Schonhuth, A. (2018). Computational pan-genomics: status, promises and challenges. Briefings in Bioinformatics, 19(1), 118-135. https://doi.org/10.1093/bib/bbw089

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title = "Computational pan-genomics: status, promises and challenges",

author = "T Marschall and M Marz and T Abeel and L Dijkstra and BE Dutilh and A Ghaffaari and P Kersey and WP Kloosterman and V Makinen and AM Novak and B Paten and D Porubsky and E Rivals and C Alkan and Baaijens, \{J A\} and \{de Bakker\}, PIW and V Boeva and RJP Bonnal and F Chiaromonte and R Chikhi and FD Ciccarelli and R Cijvat and E Datema and Cornelia Duijn and EE Eichler and C Ernst and E Eskin and E Garrison and M El-Kebir and GW Klau and JO Korbel and EW Lameijer and B Langmead and M Martin and P Medvedev and JC Mu and P Neerincx and K Ouwens and P Peterlongo and N Pisanti and S Rahmann and B Raphael and K Reinert and D Ridder and Ridder, \{J (Jannemarie)\} and M Schlesner and O Schulz-Trieglaff and AD Sanders and S Sheikhizadeh and C Shneider and S Smit and D Valenzuela and JY Wang and L Wessels and Y Zhang and V Guryev and F Vandin and K Ye and A Schonhuth",

year = "2018",

doi = "10.1093/bib/bbw089",

language = "Undefined/Unknown",

volume = "19",

pages = "118--135",

journal = "Briefings in Bioinformatics",

issn = "1467-5463",

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Marschall, T, Marz, M, Abeel, T, Dijkstra, L, Dutilh, BE, Ghaffaari, A, Kersey, P, Kloosterman, WP, Makinen, V, Novak, AM, Paten, B, Porubsky, D, Rivals, E, Alkan, C, Baaijens, JA, de Bakker, PIW, Boeva, V, Bonnal, RJP, Chiaromonte, F, Chikhi, R, Ciccarelli, FD, Cijvat, R, Datema, E, Duijn, C, Eichler, EE, Ernst, C, Eskin, E, Garrison, E, El-Kebir, M, Klau, GW, Korbel, JO, Lameijer, EW, Langmead, B, Martin, M, Medvedev, P, Mu, JC, Neerincx, P, Ouwens, K, Peterlongo, P, Pisanti, N, Rahmann, S, Raphael, B, Reinert, K, Ridder, D, Ridder, J, Schlesner, M, Schulz-Trieglaff, O, Sanders, AD, Sheikhizadeh, S, Shneider, C, Smit, S, Valenzuela, D, Wang, JY, Wessels, L, Zhang, Y, Guryev, V, Vandin, F, Ye, K & Schonhuth, A 2018, 'Computational pan-genomics: status, promises and challenges', Briefings in Bioinformatics, vol. 19, no. 1, pp. 118-135. https://doi.org/10.1093/bib/bbw089

TY - JOUR

T1 - Computational pan-genomics: status, promises and challenges

AU - Marschall, T

AU - Marz, M

AU - Abeel, T

AU - Dijkstra, L

AU - Dutilh, BE

AU - Ghaffaari, A

AU - Kersey, P

AU - Kloosterman, WP

AU - Makinen, V

AU - Novak, AM

AU - Paten, B

AU - Porubsky, D

AU - Rivals, E

AU - Alkan, C

AU - Baaijens, J A

AU - de Bakker, PIW

AU - Boeva, V

AU - Bonnal, RJP

AU - Chiaromonte, F

AU - Chikhi, R

AU - Ciccarelli, FD

AU - Cijvat, R

AU - Datema, E

AU - Duijn, Cornelia

AU - Eichler, EE

AU - Ernst, C

AU - Eskin, E

AU - Garrison, E

AU - El-Kebir, M

AU - Klau, GW

AU - Korbel, JO

AU - Lameijer, EW

AU - Langmead, B

AU - Martin, M

AU - Medvedev, P

AU - Mu, JC

AU - Neerincx, P

AU - Ouwens, K

AU - Peterlongo, P

AU - Pisanti, N

AU - Rahmann, S

AU - Raphael, B

AU - Reinert, K

AU - Ridder, D

AU - Ridder, J (Jannemarie)

AU - Schlesner, M

AU - Schulz-Trieglaff, O

AU - Sanders, AD

AU - Sheikhizadeh, S

AU - Shneider, C

AU - Smit, S

AU - Valenzuela, D

AU - Wang, JY

AU - Wessels, L

AU - Zhang, Y

AU - Guryev, V

AU - Vandin, F

AU - Ye, K

AU - Schonhuth, A

PY - 2018

Y1 - 2018

U2 - 10.1093/bib/bbw089

DO - 10.1093/bib/bbw089

M3 - Article

SN - 1467-5463

VL - 19

SP - 118

EP - 135

JO - Briefings in Bioinformatics

JF - Briefings in Bioinformatics

IS - 1

ER -