Gene length corrected trimmed mean of M-values (GeTMM) processing of RNA-seq data performs similarly in intersample analyses while improving intrasample comparisons

Marcel Smid; Robert Coebergh van den Braak; Harmen van de Werken; Job van Riet; Anne Galen; Vanja Weerd; Michelle Daane; Sandra Bril; Zarina Lalmahomed; WP Kloosterman; Saskia Wilting; John Foekens; J.N.M. IJzermans; John Martens; Anieta Sieuwerts

doi:10.1186/s12859-018-2246-7

Gene length corrected trimmed mean of M-values (GeTMM) processing of RNA-seq data performs similarly in intersample analyses while improving intrasample comparisons

Marcel Smid
, Robert Coebergh van den Braak
, Harmen van de Werken
, Job van Riet
, Anne Galen
, Vanja Weerd
, Michelle Daane
, Sandra Bril
, Zarina Lalmahomed
, WP Kloosterman
, Saskia Wilting
, John Foekens
, J.N.M. IJzermans
, John Martens
, Anieta Sieuwerts

Research output: Contribution to journal › Article › Academic › peer-review

143 Citations (Scopus)

141 Downloads (Pure)

Original language	Undefined/Unknown
Article number	236
Journal	BMC Bioinformatics
Volume	19
DOIs	https://doi.org/10.1186/s12859-018-2246-7
Publication status	Published - 2018

Research programs

EMC MM-03-49-01
EMC MM-03-86-01
EMC MM-04-47-07

Access to Document

10.1186/s12859-018-2246-7

REPUB_109041-OA.pdfFinal published version, 2.41 MB

http://hdl.handle.net/1765/109041

Cite this

Smid, M., Coebergh van den Braak, R., van de Werken, H., van Riet, J., Galen, A., Weerd, V., Daane, M., Bril, S., Lalmahomed, Z., Kloosterman, WP., Wilting, S., Foekens, J., IJzermans, J. N. M., Martens, J., & Sieuwerts, A. (2018). Gene length corrected trimmed mean of M-values (GeTMM) processing of RNA-seq data performs similarly in intersample analyses while improving intrasample comparisons. BMC Bioinformatics, 19, Article 236. https://doi.org/10.1186/s12859-018-2246-7

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title = "Gene length corrected trimmed mean of M-values (GeTMM) processing of RNA-seq data performs similarly in intersample analyses while improving intrasample comparisons",

author = "Marcel Smid and \{Coebergh van den Braak\}, Robert and \{van de Werken\}, Harmen and \{van Riet\}, Job and Anne Galen and Vanja Weerd and Michelle Daane and Sandra Bril and Zarina Lalmahomed and WP Kloosterman and Saskia Wilting and John Foekens and J.N.M. IJzermans and John Martens and Anieta Sieuwerts",

year = "2018",

doi = "10.1186/s12859-018-2246-7",

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volume = "19",

journal = "BMC Bioinformatics",

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Smid, M , Coebergh van den Braak, R , van de Werken, H, van Riet, J, Galen, A, Weerd, V, Daane, M, Bril, S, Lalmahomed, Z, Kloosterman, WP, Wilting, S, Foekens, J, IJzermans, JNM , Martens, J & Sieuwerts, A 2018, 'Gene length corrected trimmed mean of M-values (GeTMM) processing of RNA-seq data performs similarly in intersample analyses while improving intrasample comparisons', BMC Bioinformatics, vol. 19, 236. https://doi.org/10.1186/s12859-018-2246-7

TY - JOUR

T1 - Gene length corrected trimmed mean of M-values (GeTMM) processing of RNA-seq data performs similarly in intersample analyses while improving intrasample comparisons

AU - Smid, Marcel

AU - Coebergh van den Braak, Robert

AU - van de Werken, Harmen

AU - van Riet, Job

AU - Galen, Anne

AU - Weerd, Vanja

AU - Daane, Michelle

AU - Bril, Sandra

AU - Lalmahomed, Zarina

AU - Kloosterman, WP

AU - Wilting, Saskia

AU - Foekens, John

AU - IJzermans, J.N.M.

AU - Martens, John

AU - Sieuwerts, Anieta

PY - 2018

Y1 - 2018

U2 - 10.1186/s12859-018-2246-7

DO - 10.1186/s12859-018-2246-7

M3 - Article

C2 - 29929481

SN - 1471-2105

VL - 19

JO - BMC Bioinformatics

JF - BMC Bioinformatics

M1 - 236

ER -