Genomic SNP array as a gold standard for prenatal diagnosis of foetal ultrasound abnormalities

Gosia Srebniak; Marjan Boter; Grietje Oudesluijs; Titia Overbeek; LCP Govaerts; Karin Diderich; Renske Oegema; Maarten Knapen; Ingrid De Graaf - van de Laar; Marieke Joosten; D Opstal; Robert-Jan Galjaard

doi:10.1186/1755-8166-5-14

Genomic SNP array as a gold standard for prenatal diagnosis of foetal ultrasound abnormalities

Gosia Srebniak, Marjan Boter, Grietje Oudesluijs, Titia Overbeek, LCP Govaerts, Karin Diderich, Renske Oegema, Maarten Knapen, Ingrid De Graaf - van de Laar, Marieke Joosten, D Opstal, Robert-Jan Galjaard

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Abstract

Background: We have investigated whether replacing conventional karyotyping by SNP array analysis in cases of foetal ultrasound abnormalities would increase the diagnostic yield and speed of prenatal diagnosis in clinical practice. Findings/results: From May 2009 till June 2011 we performed HumanCytoSNP-12 array (HCS) (http://www.Illumina.com) analysis in 207 cases of foetal structural abnormalities. HCS allows detecting unbalanced genomic abnormalities with a resolution of about 150/200 kb. All cases were selected by a clinical geneticist after excluding the most common aneuploidies by RAD (rapid aneuploidy detection). Pre-test genetic counselling was offered in all cases. In 24/207 (11,6%) foetuses a clinically relevant Conclusions: Prenatal SNP array testing is faster than karyotyping and allows detecting much smaller aberrations (similar to 0.15 Mb) in addition to the microscopic unbalanced chromosome abnormalities detectable with karyotyping (similar to > 5 Mb). Since karyotyping would have missed 66% (16/24) of genomic abnormalities in our cohort, we propose to perform genomic high resolution array testing assisted by pre-test counselling as a primary prenatal diagnostic test in cases of foetal ultrasound a

Original language	Undefined/Unknown
Journal	Molecular Cytogenetics
Volume	5
DOIs	https://doi.org/10.1186/1755-8166-5-14
Publication status	Published - 2012

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Cite this

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title = "Genomic SNP array as a gold standard for prenatal diagnosis of foetal ultrasound abnormalities",

abstract = "Background: We have investigated whether replacing conventional karyotyping by SNP array analysis in cases of foetal ultrasound abnormalities would increase the diagnostic yield and speed of prenatal diagnosis in clinical practice. Findings/results: From May 2009 till June 2011 we performed HumanCytoSNP-12 array (HCS) (http://www.Illumina.com) analysis in 207 cases of foetal structural abnormalities. HCS allows detecting unbalanced genomic abnormalities with a resolution of about 150/200 kb. All cases were selected by a clinical geneticist after excluding the most common aneuploidies by RAD (rapid aneuploidy detection). Pre-test genetic counselling was offered in all cases. In 24/207 (11,6%) foetuses a clinically relevant Conclusions: Prenatal SNP array testing is faster than karyotyping and allows detecting much smaller aberrations (similar to 0.15 Mb) in addition to the microscopic unbalanced chromosome abnormalities detectable with karyotyping (similar to > 5 Mb). Since karyotyping would have missed 66% (16/24) of genomic abnormalities in our cohort, we propose to perform genomic high resolution array testing assisted by pre-test counselling as a primary prenatal diagnostic test in cases of foetal ultrasound a",

author = "Gosia Srebniak and Marjan Boter and Grietje Oudesluijs and Titia Overbeek and LCP Govaerts and Karin Diderich and Renske Oegema and Maarten Knapen and {De Graaf - van de Laar}, Ingrid and Marieke Joosten and D Opstal and Robert-Jan Galjaard",

year = "2012",

doi = "10.1186/1755-8166-5-14",

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journal = "Molecular Cytogenetics",

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T1 - Genomic SNP array as a gold standard for prenatal diagnosis of foetal ultrasound abnormalities

AU - Srebniak, Gosia

AU - Boter, Marjan

AU - Oudesluijs, Grietje

AU - Overbeek, Titia

AU - Govaerts, LCP

AU - Diderich, Karin

AU - Oegema, Renske

AU - Knapen, Maarten

AU - De Graaf - van de Laar, Ingrid

AU - Joosten, Marieke

AU - Opstal, D

AU - Galjaard, Robert-Jan

PY - 2012

Y1 - 2012

N2 - Background: We have investigated whether replacing conventional karyotyping by SNP array analysis in cases of foetal ultrasound abnormalities would increase the diagnostic yield and speed of prenatal diagnosis in clinical practice. Findings/results: From May 2009 till June 2011 we performed HumanCytoSNP-12 array (HCS) (http://www.Illumina.com) analysis in 207 cases of foetal structural abnormalities. HCS allows detecting unbalanced genomic abnormalities with a resolution of about 150/200 kb. All cases were selected by a clinical geneticist after excluding the most common aneuploidies by RAD (rapid aneuploidy detection). Pre-test genetic counselling was offered in all cases. In 24/207 (11,6%) foetuses a clinically relevant Conclusions: Prenatal SNP array testing is faster than karyotyping and allows detecting much smaller aberrations (similar to 0.15 Mb) in addition to the microscopic unbalanced chromosome abnormalities detectable with karyotyping (similar to > 5 Mb). Since karyotyping would have missed 66% (16/24) of genomic abnormalities in our cohort, we propose to perform genomic high resolution array testing assisted by pre-test counselling as a primary prenatal diagnostic test in cases of foetal ultrasound a

AB - Background: We have investigated whether replacing conventional karyotyping by SNP array analysis in cases of foetal ultrasound abnormalities would increase the diagnostic yield and speed of prenatal diagnosis in clinical practice. Findings/results: From May 2009 till June 2011 we performed HumanCytoSNP-12 array (HCS) (http://www.Illumina.com) analysis in 207 cases of foetal structural abnormalities. HCS allows detecting unbalanced genomic abnormalities with a resolution of about 150/200 kb. All cases were selected by a clinical geneticist after excluding the most common aneuploidies by RAD (rapid aneuploidy detection). Pre-test genetic counselling was offered in all cases. In 24/207 (11,6%) foetuses a clinically relevant Conclusions: Prenatal SNP array testing is faster than karyotyping and allows detecting much smaller aberrations (similar to 0.15 Mb) in addition to the microscopic unbalanced chromosome abnormalities detectable with karyotyping (similar to > 5 Mb). Since karyotyping would have missed 66% (16/24) of genomic abnormalities in our cohort, we propose to perform genomic high resolution array testing assisted by pre-test counselling as a primary prenatal diagnostic test in cases of foetal ultrasound a

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DO - 10.1186/1755-8166-5-14

M3 - Article

SN - 1755-8166

VL - 5

JO - Molecular Cytogenetics

JF - Molecular Cytogenetics

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