HIV-1 evolution in patients undergoing immunotherapy with Tat, Rev, and Nef expressing dendritic cells followed by treatment interruption

Anna Goede, HWM van Deutekom, B Vrancken, M (Martin) Schutten, SD Allard, Carel Baalen, Ab Osterhaus, K Thielemans, JL Aerts, C Kesmir, P Lemey, Rob Gruters

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Abstract

Objectives:This study aimed to evaluate HIV sequence evolution in whole genes and in CD8(+) T-cell epitope regions following immunotherapy and subsequent analytical treatment interruption (ATI). A second objective of this study was to analyze associations between vaccine-specific immune responses and epitope mutation rates.Design:HIV-1-infected patients on combined antiretroviral therapy (cART) were subjected to immunotherapy by the administration of an autologous dendritic cell-based therapeutic vaccine expressing Tat, Rev, and Nef and subsequent ATI.Methods:HIV-1 genes were amplified and sequenced from plasma RNA obtained before initiation of cART as well as during ATI. Control sequences for virus evolution in untreated HIV-1-infected individuals were obtained from the HIV Sequence Database (Los Alamos). CD8(+) T-cell epitope regions were defined based on literature data and prediction models. HIV-1-specific immune responses were evaluated to analyze their impact on sequence evolution.Results:Viral sequence evolution in the tat, rev, and nef genes of vaccinated patients was similar to that of controls. The number of mutations observed inside and outside CD8(+) T-cell epitopes was comparable for vaccine-targeted and nontargeted proteins. We found no evidence for an impact of vaccine-induced or enhanced immune responses on the number of mutations inside or outside epitopes.Conclusion:Therapeutic vaccination of HIV-1-infected patients with a dendritic cell-based vaccine targeting Tat, Rev, and Nef did not affect virus evolution at the whole gene level nor at the CD8(+) T-cell epitope level.
Original languageUndefined/Unknown
Pages (from-to)2679-2689
Number of pages11
JournalAIDS
Volume27
Issue number17
DOIs
Publication statusPublished - 2013

Research programs

  • EMC MM-04-27-01
  • EMC OR-01-34-01

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