TY - JOUR
T1 - microGalaxy
T2 - A gateway to tools, workflows, and training for reproducible and FAIR analysis of microbial data
AU - Nasr, Engy
AU - Amato, Pierre
AU - microGalaxy Community
AU - Bhardwaj, Anshu
AU - Blankenberg, Daniel
AU - Brites, Daniela
AU - Cumbo, Fabio
AU - Do, Katherine
AU - Ferrari, Emanuele
AU - Griffin, Timothy J
AU - Grüning, Björn
AU - Hiltemann, Saskia
AU - Jagtap, Pratik
AU - Mehta, Subina
AU - Métris, Kimberly
AU - Momin, Saim
AU - Oba, Asime
AU - Pavloudi, Christina
AU - Pechlivanis, Nikos
AU - Péguilhan, Raphaëlle
AU - Psomopoulos, Fotis
AU - Rosic, Nedeljka
AU - Schatz, Michael C
AU - Schiml, Valerie Claudia
AU - Siguret, Cléa
AU - Soranzo, Nicola
AU - Stubbs, Andrew
AU - van Heusden, Peter
AU - Vohra, Mustafa
AU - Zierep, Paul
AU - Batut, Bérénice
PY - 2024/12/27
Y1 - 2024/12/27
N2 - Microbial research generates vast and complex data from diverse omics technologies, necessitating innovative analytical solutions. microGalaxy (Galaxy for Microbiology) addresses these needs with a user-friendly platform that integrates >220 tool suites and >65 curated workflows for microbial analyses, including taxonomic profiling, assembly, annotation, and functional analysis. Hosted on the main EU Galaxy server (microgalaxy.usegalaxy.eu), it supports workflow creation & customization, sharing, and updates across public and private Galaxy servers, ensuring flexibility and reproducibility. The platform also offers 45+ tutorials, 15+ instructional videos, and structured learning pathways, empowering researchers to conduct advanced analyses. Backed by a community-driven approach, microGalaxy prioritizes tool testing, semi-automatic updates, and multi-omics integration to meet global research demands. With its focus on rapid workflow prototyping and high-throughput processing, microGalaxy provides scalable resources for researchers at all expertise levels, enabling them to tackle challenges in microbial data analysis with confidence and efficiency.
AB - Microbial research generates vast and complex data from diverse omics technologies, necessitating innovative analytical solutions. microGalaxy (Galaxy for Microbiology) addresses these needs with a user-friendly platform that integrates >220 tool suites and >65 curated workflows for microbial analyses, including taxonomic profiling, assembly, annotation, and functional analysis. Hosted on the main EU Galaxy server (microgalaxy.usegalaxy.eu), it supports workflow creation & customization, sharing, and updates across public and private Galaxy servers, ensuring flexibility and reproducibility. The platform also offers 45+ tutorials, 15+ instructional videos, and structured learning pathways, empowering researchers to conduct advanced analyses. Backed by a community-driven approach, microGalaxy prioritizes tool testing, semi-automatic updates, and multi-omics integration to meet global research demands. With its focus on rapid workflow prototyping and high-throughput processing, microGalaxy provides scalable resources for researchers at all expertise levels, enabling them to tackle challenges in microbial data analysis with confidence and efficiency.
U2 - 10.1101/2024.12.23.629682
DO - 10.1101/2024.12.23.629682
M3 - Article
C2 - 39764050
SN - 2692-8205
JO - bioRxiv : the preprint server for biology
JF - bioRxiv : the preprint server for biology
ER -